A Way Forward in Breeding Rice to Withstand High Nighttime Stress
Gene editing may aid in development of rice tolerant of higher temperatures
By John Lovett – Jan. 13, 2025
FAYETTEVILLE, Ark. — Rice plants can deal with the heat during the day, but when the sun goes down, they need to chill out.
Developing rice with tolerance to higher nighttime temperatures has become a focus for rice breeders because studies are showing nights are getting warmer in the largest rice-growing regions.
Half of the rice grown in the United States comes out of Arkansas, mostly from the Delta. Arkansas has been home to about 1.4 million acres planted in the grain that serves a staple food for more than half of the world’s population, according to the USDA Economic Research Service.
“Rice breeders have tried to incorporate tolerance genes into the background of Arkansas rice, which is not an easy task,” said Vibha Srivastava, professor of plant biotechnology in the crop, soil and environmental sciences department for the University of Arkansas System Division of Agriculture. “They have just started to scratch the surface in that area, but they’re making good headway. Some promising updates are there.”
However, Srivastava said there may be another way forward — gene editing, which is different from genetic modification because it does not insert DNA sequences from other organisms, she explained
Srivastava explores the topic of breeding rice and the potential for gene editing to tolerate night heat in the December issue of Current Opinion in Plant Biology with an article titled “Beat the heat: Breeding, genomics, and gene editing for high nighttime temperature tolerance in rice.”
Her co-authors of the article were Christian De Guzman, assistant professor of rice breeding and genetics, and Samual B. Fernandes, assistant professor of agricultural statistics and quantitative genetics, both researchers with the Arkansas Agricultural Experiment Station, the research arm of the University of Arkansas System Division of Agriculture.
It is the first review article about high nighttime tolerance in rice to their knowledge, gathering all the available scientific literature on the subject in one place.
Srivastava said there has also been information on the subject published in the B.R. Wells Rice Research Series with studies led by Paul Counce, professor of rice physiology at the Rice Research and Extension Center, on screening rice for responses to high nighttime temperature, susceptibility, or tolerance.
De Guzman, Fernandes and Srivastava were awarded a four-year, $585,650 grant by the U.S. Department of Agriculture to breed rice for high nighttime tolerance. The Current Opinion in Plant Biology article expounds on the information gathered for the grant proposal.
Why night heat tolerance
When rice is in its flowering and grain-filling stages, it is more sensitive to high nighttime temperatures than high daytime temps. The optimum rice growing temperatures vary globally, but the authors point out that most rice varieties show sensitivity to night-time temperatures above 28 Celsius, or 82.4 Fahrenheit.
The higher temperatures lead to yield losses and grain quality decline expressed as “chalkiness,” an undesirable characteristic that impacts milling quality, cooking quality and palatability.
Based on recent studies, the authors noted that the results of high nighttime stress can lead up to 90 percent loss in grain yield and a significant increase in chalkiness.
Srivastava said the genetic mechanisms of high nighttime stress susceptibility are not clear, but they know that an elevated respiration rate during high nighttime temperatures diverts energy from growth to repair and impacts the formation of biomass.
Challenges ahead
While there are no known modern cultivars bred in the United States that can withstand exposure to high nighttime temperatures during the reproductive stage, an Indian variety called Nagina 22 offers high nighttime tolerance. However, when grown in field conditions in Arkansas it showed some undesirable traits like small grain size, chalkiness and tall stalks susceptible to falling over, known as lodging.
Nagina 22 has been used in crosses with modern cultivars to get the high nighttime tolerance, but the genes have not been cloned. Without gene identity, the application of gene editing to improve the traits of popular cultivars is impossible, Srivastava said. In the meantime, she points to gene editing as another way to improve desirable traits in Nagina 22, or in crosses with Nagina 22.
A few advanced breeding lines in the Arkansas Rice Breeding Program could be candidates for gene editing if they show improved traits related to yield and grain chalkiness after high nighttime stress.
A critical consideration with Nagina 22 and its derivative lines, however, is to improve its naturally high grain chalkiness. Cloning and analysis of Chalk5, a major chalk region of DNA in rice, opens a route to reducing chalkiness by gene editing, she noted.
“Our goal is to get more production and more flavorful taste when it comes to rice, but quality of the grain is important,” Srivastava said.
HOLDING THE FUTURE — Vibha Srivastava holds grains of rice from a wild variety, left, and a variety under development to tolerate higher nighttime temperatures. (U of A System Division of Agriculture photo by Paden Johnson)
Warmer nights
National and regional studies indicate a nighttime warming trend in the United States. According to the Fifth National Climate Assessment released in 2023, “nighttime temperatures and winter temperatures have warmed more rapidly than daytime and summer temperatures.”
A 2021 study with input from researchers at Arkansas State University and the U.S. Department of Agriculture-Agricultural Research Service’s Delta Water Management Research Unit in Jonesboro showed an increase of about 1-degree Fahrenheit (0.53 Celsius) in Arkansas’s seasonal night air temperature between 1940 and 2018. The study was titled “Significant Shift of Ambient Night-Time Air Temperature during Rice Growing Season in Major US Rice States.”
To learn more about the Division of Agriculture research, visit the Arkansas Agricultural Experiment Station website. Follow us on 𝕏 at @ArkAgResearch, subscribe to the Food, Farms and Forests podcast and sign up for our monthly newsletter, the Arkansas Agricultural Research Report. To learn more about the Division of Agriculture, visit uada.edu. Follow us on 𝕏 at @AgInArk. To learn about extension programs in Arkansas, contact your local Cooperative Extension Service agent or visit uaex.uada.edu.
About the Division of Agriculture
The University of Arkansas System Division of Agriculture’s mission is to strengthen agriculture, communities, and families by connecting trusted research to the adoption of best practices. Through the Agricultural Experiment Station and the Cooperative Extension Service, the Division of Agriculture conducts research and extension work within the nation’s historic land grant education system.
The Division of Agriculture is one of 20 entities within the University of Arkansas System. It has offices in all 75 counties in Arkansas and faculty on three campuses.
The University of Arkansas System Division of Agriculture offers all its Extension and Research programs to all eligible persons without regard to race, color, sex, gender identity, sexual orientation, national origin, religion, age, disability, marital or veteran status, genetic information, or any other legally protected status, and is an Affirmative Action/Equal Opportunity Employer.
HOLDING THE FUTURE — Vibha Srivastava holds grains of rice from a wild variety, left, and a variety under development to tolerate higher nighttime temperatures. (U of A System Division of Agriculture photo by Paden Johnson)
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